J3_8T3D_024
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 8T3D|1|A1|A|3172, 8T3D|1|A1|G|3173, 8T3D|1|A1|A|3215, 8T3D|1|A1|G|3216, 8T3D|1|A1|C|3217, 8T3D|1|A1|G|3219, 8T3D|1|A1|A|3268, 8T3D|1|A1|U|3270, 8T3D|1|A1|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3D_024 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.2035
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8T3D|1|A1|U|3171
8T3D|1|A1|A|3172
8T3D|1|A1|G|3173
8T3D|1|A1|A|3174
8T3D|1|A1|U|3175
8T3D|1|A1|G|3176
*
8T3D|1|A1|C|3212
8T3D|1|A1|A|3213
8T3D|1|A1|U|3214
8T3D|1|A1|A|3215
8T3D|1|A1|G|3216
8T3D|1|A1|C|3217
8T3D|1|A1|A|3218
8T3D|1|A1|G|3219
8T3D|1|A1|G|3220
*
8T3D|1|A1|C|3265
8T3D|1|A1|G|3266
8T3D|1|A1|A|3267
8T3D|1|A1|A|3268
8T3D|1|A1|U|3269
8T3D|1|A1|U|3270
8T3D|1|A1|G|3271
8T3D|1|A1|C|3272
8T3D|1|A1|A|3273
8T3D|1|A1|A|3274
8T3D|1|A1|U|3275
8T3D|1|A1|G|3276
8T3D|1|A1|U|3277
8T3D|1|A1|C|3278
8T3D|1|A1|A|3279
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AE
- 60S ribosomal protein L6-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Af
- 60S ribosomal protein L33-A
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