J3_8T3D_025
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3D_025 not in the Motif Atlas
- Homologous match to J3_8P9A_065
- Geometric discrepancy: 0.1507
- The information below is about J3_8P9A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_81015.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8T3D|1|A1|C|3298
8T3D|1|A1|A|3299
8T3D|1|A1|U|3300
*
8T3D|1|A1|A|3314
8T3D|1|A1|G|3315
8T3D|1|A1|A|3316
8T3D|1|A1|U|3317
8T3D|1|A1|G|3318
*
8T3D|1|A1|C|3388
8T3D|1|A1|U|3389
8T3D|1|A1|G|3390
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ad
- 60S ribosomal protein L31-A
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