3D structure

PDB id
8T3D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.95 Å

Loop

Sequence
UCAAAG*CGCAAAU*AG(PSU)GACAA
Length
21 nucleotides
Bulged bases
8T3D|1|B5|A|468
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T3D|1|B5|U|37
8T3D|1|B5|C|38
8T3D|1|B5|A|39
8T3D|1|B5|A|40
8T3D|1|B5|A|41
8T3D|1|B5|G|42
*
8T3D|1|B5|C|433
8T3D|1|B5|G|434
8T3D|1|B5|C|435
8T3D|1|B5|A|436
8T3D|1|B5|A|437
8T3D|1|B5|A|438
8T3D|1|B5|U|439
*
8T3D|1|B5|A|464
8T3D|1|B5|G|465
8T3D|1|B5|PSU|466
8T3D|1|B5|G|467
8T3D|1|B5|A|468
8T3D|1|B5|C|469
8T3D|1|B5|A|470
8T3D|1|B5|A|471

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BJ
40S ribosomal protein S9-A
Chain BX
40S ribosomal protein S23-A
Chain DC
Elongation factor 2

Coloring options:

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