J3_8T3D_030

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8T3D|1|B5|A|217, 8T3D|1|B5|A|218, 8T3D|1|B5|U|223, 8T3D|1|B5|C|224, 8T3D|1|B5|A|225, 8T3D|1|B5|U|238, 8T3D|1|B5|C|239, 8T3D|1|B5|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|B5|A|213
8T3D|1|B5|G|214
8T3D|1|B5|A|215
8T3D|1|B5|U|216
8T3D|1|B5|A|217
8T3D|1|B5|A|218
8T3D|1|B5|A|219
8T3D|1|B5|A|220
8T3D|1|B5|A|221
8T3D|1|B5|A|222
8T3D|1|B5|U|223
8T3D|1|B5|C|224
8T3D|1|B5|A|225
8T3D|1|B5|A|226
8T3D|1|B5|U|227
8T3D|1|B5|G|228
*
8T3D|1|B5|C|237
8T3D|1|B5|U|238
8T3D|1|B5|C|239
8T3D|1|B5|U|240
8T3D|1|B5|U|241
8T3D|1|B5|U|242
8T3D|1|B5|G|243
*
8T3D|1|B5|C|250
8T3D|1|B5|A|251
8T3D|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A