J3_8T3D_046
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AG(PSU)
- Length
- 20 nucleotides
- Bulged bases
- 8T3D|1|B5|A|47
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3D_046 not in the Motif Atlas
- Homologous match to J3_8CRE_072
- Geometric discrepancy: 0.1525
- The information below is about J3_8CRE_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8T3D|1|B5|A|41
8T3D|1|B5|G|42
8T3D|1|B5|A|43
8T3D|1|B5|U|44
8T3D|1|B5|U|45
8T3D|1|B5|A|46
8T3D|1|B5|A|47
8T3D|1|B5|G|48
*
8T3D|1|B5|C|431
8T3D|1|B5|G|432
8T3D|1|B5|C|433
8T3D|1|B5|G|434
8T3D|1|B5|C|435
8T3D|1|B5|A|436
8T3D|1|B5|A|437
8T3D|1|B5|A|438
8T3D|1|B5|U|439
*
8T3D|1|B5|A|464
8T3D|1|B5|G|465
8T3D|1|B5|PSU|466
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BI
- 40S ribosomal protein S8-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BX
- 40S ribosomal protein S23-A
- Chain DC
- Elongation factor 2
Coloring options: