J3_8T3E_010
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- (PSU)U*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8T3E|1|A1|A|1065, 8T3E|1|A1|A|1093, 8T3E|1|A1|U|1094, 8T3E|1|A1|U|1095
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3E|1|A1|PSU|986
8T3E|1|A1|U|987
*
8T3E|1|A1|A|1062
8T3E|1|A1|G|1063
8T3E|1|A1|A|1064
8T3E|1|A1|A|1065
8T3E|1|A1|G|1066
*
8T3E|1|A1|C|1092
8T3E|1|A1|A|1093
8T3E|1|A1|U|1094
8T3E|1|A1|U|1095
8T3E|1|A1|U|1096
8T3E|1|A1|G|1097
8T3E|1|A1|A|1098
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L7-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
Coloring options: