J3_8T3E_021
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8T3E|1|A1|A|2703, 8T3E|1|A1|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3E_021 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.1103
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8T3E|1|A1|C|2664
8T3E|1|A1|U|2665
8T3E|1|A1|C|2666
*
8T3E|1|A1|G|2690
8T3E|1|A1|A|2691
8T3E|1|A1|A|2692
*
8T3E|1|A1|U|2701
8T3E|1|A1|A|2702
8T3E|1|A1|A|2703
8T3E|1|A1|A|2704
8T3E|1|A1|A|2705
8T3E|1|A1|G|2706
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- RPL5 isoform 1
- Chain AJ
- RPL11A isoform 1
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: