J3_8T3E_029

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8T3E|1|B5|A|217, 8T3E|1|B5|A|218, 8T3E|1|B5|U|223, 8T3E|1|B5|A|226, 8T3E|1|B5|U|227, 8T3E|1|B5|U|238, 8T3E|1|B5|C|239, 8T3E|1|B5|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|B5|A|213
8T3E|1|B5|G|214
8T3E|1|B5|A|215
8T3E|1|B5|U|216
8T3E|1|B5|A|217
8T3E|1|B5|A|218
8T3E|1|B5|A|219
8T3E|1|B5|A|220
8T3E|1|B5|A|221
8T3E|1|B5|A|222
8T3E|1|B5|U|223
8T3E|1|B5|C|224
8T3E|1|B5|A|225
8T3E|1|B5|A|226
8T3E|1|B5|U|227
8T3E|1|B5|G|228
*
8T3E|1|B5|C|237
8T3E|1|B5|U|238
8T3E|1|B5|C|239
8T3E|1|B5|U|240
8T3E|1|B5|U|241
8T3E|1|B5|U|242
8T3E|1|B5|G|243
*
8T3E|1|B5|C|250
8T3E|1|B5|A|251
8T3E|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A