J3_8T3E_037
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8T3E|1|B5|G|1199, 8T3E|1|B5|G|1201, 8T3E|1|B5|A|1203
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3E_037 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1024
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8T3E|1|B5|C|1180
8T3E|1|B5|PSU|1181
8T3E|1|B5|U|1182
8T3E|1|B5|A|1183
8T3E|1|B5|A|1184
8T3E|1|B5|U|1185
8T3E|1|B5|U|1186
8T3E|1|B5|PSU|1187
*
8T3E|1|B5|G|1198
8T3E|1|B5|G|1199
8T3E|1|B5|G|1200
8T3E|1|B5|G|1201
8T3E|1|B5|A|1202
8T3E|1|B5|A|1203
8T3E|1|B5|A|1204
8T3E|1|B5|C|1205
8T3E|1|B5|U|1206
8T3E|1|B5|C|1207
8T3E|1|B5|A|1208
8T3E|1|B5|C|1209
*
8T3E|1|B5|G|1454
8T3E|1|B5|G|1455
8T3E|1|B5|C|1456
8T3E|1|B5|C|1457
8T3E|1|B5|G|1458
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- RPS15 isoform 1
- Chain BS
- 40S ribosomal protein S18-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
- Chain DC
- Elongation factor 2
Coloring options: