J3_8T3F_031
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8T3F|1|B5|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3F_031 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1286
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8T3F|1|B5|U|633
8T3F|1|B5|G|634
8T3F|1|B5|A|635
*
8T3F|1|B5|U|861
8T3F|1|B5|A|862
8T3F|1|B5|A|863
8T3F|1|B5|U|864
8T3F|1|B5|A|865
8T3F|1|B5|G|866
*
8T3F|1|B5|C|962
8T3F|1|B5|A|963
8T3F|1|B5|U|964
8T3F|1|B5|U|965
8T3F|1|B5|A|966
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- RPS22A isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Bb
- 40S ribosomal protein S27-A
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