J3_8T3F_038
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GGUCCAGAC*GGGUG*UUAGACGUUC
- Length
- 24 nucleotides
- Bulged bases
- 8T3F|1|B5|A|1217, 8T3F|1|B5|G|1445, 8T3F|1|B5|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3F|1|B5|G|1212
8T3F|1|B5|G|1213
8T3F|1|B5|U|1214
8T3F|1|B5|C|1215
8T3F|1|B5|C|1216
8T3F|1|B5|A|1217
8T3F|1|B5|G|1218
8T3F|1|B5|A|1219
8T3F|1|B5|C|1220
*
8T3F|1|B5|G|1263
8T3F|1|B5|G|1264
8T3F|1|B5|G|1265
8T3F|1|B5|U|1266
8T3F|1|B5|G|1267
*
8T3F|1|B5|U|1442
8T3F|1|B5|U|1443
8T3F|1|B5|A|1444
8T3F|1|B5|G|1445
8T3F|1|B5|A|1446
8T3F|1|B5|C|1447
8T3F|1|B5|G|1448
8T3F|1|B5|U|1449
8T3F|1|B5|U|1450
8T3F|1|B5|C|1451
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain BP
- RPS15 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
- Chain DC
- Elongation factor 2
Coloring options: