J3_8T3F_045
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 8T3F|1|B5|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3F_045 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3245
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_99563.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8T3F|1|B5|U|1283
8T3F|1|B5|C|1284
8T3F|1|B5|U|1285
8T3F|1|B5|U|1286
8T3F|1|B5|A|1287
8T3F|1|B5|G|1288
*
8T3F|1|B5|C|1327
8T3F|1|B5|G|1328
8T3F|1|B5|A|1329
8T3F|1|B5|G|1330
8T3F|1|B5|A|1331
8T3F|1|B5|C|1332
*
8T3F|1|B5|G|1419
8T3F|1|B5|C|1420
8T3F|1|B5|A|1421
8T3F|1|B5|A|1422
8T3F|1|B5|U|1423
8T3F|1|B5|A|1424
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- RPS2 isoform 1
- Chain BD
- RPS3 isoform 1
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
Coloring options: