J3_8T4S_005
3D structure
- PDB id
- 8T4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCACC*GGGCUG
- Length
- 29 nucleotides
- Bulged bases
- 8T4S|1|2|G|1256, 8T4S|1|2|A|1258, 8T4S|1|2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T4S|1|2|C|1237
8T4S|1|2|U|1238
8T4S|1|2|U|1239
8T4S|1|2|A|1240
8T4S|1|2|A|1241
8T4S|1|2|U|1242
8T4S|1|2|U|1243
8T4S|1|2|U|1244
8T4S|1|2|G|1245
*
8T4S|1|2|C|1254
8T4S|1|2|G|1255
8T4S|1|2|G|1256
8T4S|1|2|G|1257
8T4S|1|2|A|1258
8T4S|1|2|A|1259
8T4S|1|2|A|1260
8T4S|1|2|C|1261
8T4S|1|2|C|1262
8T4S|1|2|U|1263
8T4S|1|2|C|1264
8T4S|1|2|A|1265
8T4S|1|2|C|1266
8T4S|1|2|C|1267
*
8T4S|1|2|G|1515
8T4S|1|2|G|1516
8T4S|1|2|G|1517
8T4S|1|2|C|1518
8T4S|1|2|U|1519
8T4S|1|2|G|1520
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain Q
- 40S ribosomal protein S16
- Chain S
- 40S ribosomal protein S18
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
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