J3_8T5D_002

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8T5D|1|B|U|686, 8T5D|1|B|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5D_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0665

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8T5D|1|B|U|683
8T5D|1|B|G|684
8T5D|1|B|A|685
8T5D|1|B|U|686
8T5D|1|B|C|687
8T5D|1|B|U|688
8T5D|1|B|A|689
*
8T5D|1|B|U|773
8T5D|1|B|G|774
8T5D|1|B|G|775
*
8T5D|1|B|C|791
8T5D|1|B|A|792
8T5D|1|B|A|793
8T5D|1|B|A|794

Current chains

Chain B

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2