J3_8T5D_003

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5D_003 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0809

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8T5D|1|B|C|698
8T5D|1|B|A|699
8T5D|1|B|G|700
*
8T5D|1|B|C|732
8T5D|1|B|G|733
8T5D|1|B|A|734
8T5D|1|B|A|735
8T5D|1|B|C|736
*
8T5D|1|B|G|760
8T5D|1|B|A|761
8T5D|1|B|U|762
8T5D|1|B|G|763

Current chains

Chain B

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2