J3_8T5D_012

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5D_012 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1244

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8T5D|1|v|C|936
8T5D|1|v|A|937
8T5D|1|v|A|938
8T5D|1|v|G|939
*
8T5D|1|v|C|1344
8T5D|1|v|U|1345
8T5D|1|v|A|1346
8T5D|1|v|G|1347
8T5D|1|v|U|1348
8T5D|1|v|A|1349
8T5D|1|v|A|1350
*
8T5D|1|v|U|1372
8T5D|1|v|G|1373
8T5D|1|v|A|1374
8T5D|1|v|A|1375
8T5D|1|v|U|1376
8T5D|1|v|A|1377
8T5D|1|v|C|1378
8T5D|1|v|G|1379

Current chains

Chain v

16s RNA

Nearby chains

Chain f

30S ribosomal protein S7

Chain h

30S ribosomal protein S9