J3_8T5D_022

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8T5D|1|B|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5D_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0743

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8T5D|1|B|G|297
8T5D|1|B|G|298
8T5D|1|B|A|299
8T5D|1|B|A|300
8T5D|1|B|G|301
*
8T5D|1|B|C|316
8T5D|1|B|G|317
8T5D|1|B|C|318
8T5D|1|B|G|319
8T5D|1|B|A|320
8T5D|1|B|U|321
8T5D|1|B|A|322
8T5D|1|B|C|323
8T5D|1|B|A|324
8T5D|1|B|G|325
*
8T5D|1|B|C|337
8T5D|1|B|G|338
8T5D|1|B|U|339
8T5D|1|B|A|340
8T5D|1|B|C|341

Current chains

Chain B

23S RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24