J3_8T5D_033

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8T5D|1|v|U|1212, 8T5D|1|v|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5D_033 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1298

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8T5D|1|v|C|990
8T5D|1|v|U|991
8T5D|1|v|U|992
8T5D|1|v|G|993
8T5D|1|v|A|994
8T5D|1|v|C|995
8T5D|1|v|A|996
8T5D|1|v|U|997
*
8T5D|1|v|A|1044
8T5D|1|v|C|1045
8T5D|1|v|A|1046
8T5D|1|v|G|1047
*
8T5D|1|v|C|1210
8T5D|1|v|U|1211
8T5D|1|v|U|1212
8T5D|1|v|A|1213
8T5D|1|v|C|1214
8T5D|1|v|G|1215

Current chains

Chain v

16s RNA

Nearby chains

Chain m

30S ribosomal protein S14