J3_8T8B_032

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

8T8B|1|2a|A|975, 8T8B|1|2a|G|976, 8T8B|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8B_032 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0828

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8T8B|1|2a|U|955
8T8B|1|2a|U|956
8T8B|1|2a|U|957
8T8B|1|2a|A|958
8T8B|1|2a|A|959
8T8B|1|2a|U|960
8T8B|1|2a|U|961
8T8B|1|2a|C|962
*
8T8B|1|2a|G|973
8T8B|1|2a|A|974
8T8B|1|2a|A|975
8T8B|1|2a|G|976
8T8B|1|2a|A|977
8T8B|1|2a|A|978
8T8B|1|2a|C|979
8T8B|1|2a|C|980
8T8B|1|2a|U|981
8T8B|1|2a|U|982
8T8B|1|2a|A|983
8T8B|1|2a|C|984
*
8T8B|1|2a|G|1221
8T8B|1|2a|G|1222
8T8B|1|2a|C|1223
8T8B|1|2a|G|1224
8T8B|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2y

Ribosome-associated inhibitor A