J3_8UD6_005

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

8UD6|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_005 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0406

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8UD6|1|1A|C|1306
8UD6|1|1A|A|1307
8UD6|1|1A|A|1308
8UD6|1|1A|G|1309
*
8UD6|1|1A|C|1605
8UD6|1|1A|G|1606
8UD6|1|1A|C|1607
8UD6|1|1A|A|1608
8UD6|1|1A|A|1609
8UD6|1|1A|A|1610
8UD6|1|1A|C|1611
*
8UD6|1|1A|G|1620
8UD6|1|1A|U|1621
8UD6|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34