J3_8UD6_016
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAAC*GGUGCC*GGAGCC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UD6_016 not in the Motif Atlas
- Homologous match to J3_6CZR_022
- Geometric discrepancy: 0.4271
- The information below is about J3_6CZR_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UD6|1|1a|G|1002
8UD6|1|1a|G|1003
8UD6|1|1a|A|1004
8UD6|1|1a|A|1005
8UD6|1|1a|C|1006
*
8UD6|1|1a|G|1023
8UD6|1|1a|G|1024
8UD6|1|1a|U|1025
8UD6|1|1a|G|1026
8UD6|1|1a|C|1027
8UD6|1|1a|C|1028
*
8UD6|1|1a|G|1033
8UD6|1|1a|G|1034
8UD6|1|1a|A|1035
8UD6|1|1a|G|1036
8UD6|1|1a|C|1037
8UD6|1|1a|C|1038
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: