J3_8UD6_016

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_016 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.4271

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD6|1|1a|G|1002
8UD6|1|1a|G|1003
8UD6|1|1a|A|1004
8UD6|1|1a|A|1005
8UD6|1|1a|C|1006
*
8UD6|1|1a|G|1023
8UD6|1|1a|G|1024
8UD6|1|1a|U|1025
8UD6|1|1a|G|1026
8UD6|1|1a|C|1027
8UD6|1|1a|C|1028
*
8UD6|1|1a|G|1033
8UD6|1|1a|G|1034
8UD6|1|1a|A|1035
8UD6|1|1a|G|1036
8UD6|1|1a|C|1037
8UD6|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains