3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGAAC*GGUGCC*GGAGCC
Length
17 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UD6_016 not in the Motif Atlas
Homologous match to J3_6CZR_022
Geometric discrepancy: 0.4271
The information below is about J3_6CZR_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UD6|1|1a|G|1002
8UD6|1|1a|G|1003
8UD6|1|1a|A|1004
8UD6|1|1a|A|1005
8UD6|1|1a|C|1006
*
8UD6|1|1a|G|1023
8UD6|1|1a|G|1024
8UD6|1|1a|U|1025
8UD6|1|1a|G|1026
8UD6|1|1a|C|1027
8UD6|1|1a|C|1028
*
8UD6|1|1a|G|1033
8UD6|1|1a|G|1034
8UD6|1|1a|A|1035
8UD6|1|1a|G|1036
8UD6|1|1a|C|1037
8UD6|1|1a|C|1038

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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