J3_8UD6_030

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

8UD6|1|2a|A|975, 8UD6|1|2a|G|976, 8UD6|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_030 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0709

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UD6|1|2a|U|955
8UD6|1|2a|U|956
8UD6|1|2a|U|957
8UD6|1|2a|A|958
8UD6|1|2a|A|959
8UD6|1|2a|U|960
8UD6|1|2a|U|961
8UD6|1|2a|C|962
*
8UD6|1|2a|G|973
8UD6|1|2a|A|974
8UD6|1|2a|A|975
8UD6|1|2a|G|976
8UD6|1|2a|A|977
8UD6|1|2a|A|978
8UD6|1|2a|C|979
8UD6|1|2a|C|980
8UD6|1|2a|U|981
8UD6|1|2a|U|982
8UD6|1|2a|A|983
8UD6|1|2a|C|984
*
8UD6|1|2a|G|1221
8UD6|1|2a|G|1222
8UD6|1|2a|C|1223
8UD6|1|2a|G|1224
8UD6|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA