J3_8UD6_044

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

8UD6|1|1A|A|2388, 8UD6|1|1A|U|2390, 8UD6|1|1A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_044 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.0594

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UD6|1|1A|G|2282
8UD6|1|1A|C|2283
8UD6|1|1A|C|2284
*
8UD6|1|1A|G|2384
8UD6|1|1A|C|2385
8UD6|1|1A|C|2386
8UD6|1|1A|U|2387
8UD6|1|1A|A|2388
8UD6|1|1A|G|2389
8UD6|1|1A|U|2390
8UD6|1|1A|G|2391
8UD6|1|1A|A|2392
8UD6|1|1A|A|2393
8UD6|1|1A|C|2394
8UD6|1|1A|C|2395
*
8UD6|1|1A|G|2421
8UD6|1|1A|A|2422
8UD6|1|1A|U|2423
8UD6|1|1A|C|2424
8UD6|1|1A|A|2425
8UD6|1|1A|A|2426
8UD6|1|1A|C|2427

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15

Chain 1y

Transfer RNA; tRNA