J3_8UD6_073

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

8UD6|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_073 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1309

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.1

Basepair signature

cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

8UD6|1|2a|C|1116
8UD6|1|2a|G|1117
8UD6|1|2a|C|1118
*
8UD6|1|2a|G|1155
8UD6|1|2a|G|1156
8UD6|1|2a|A|1157
8UD6|1|2a|C|1158
8UD6|1|2a|U|1159
8UD6|1|2a|G|1160
8UD6|1|2a|C|1161
*
8UD6|1|2a|G|1175
8UD6|1|2a|A|1176
8UD6|1|2a|G|1177
8UD6|1|2a|G|1178
8UD6|1|2a|A|1179
8UD6|1|2a|A|1180
8UD6|1|2a|G|1181
8UD6|1|2a|G|1182
8UD6|1|2a|A|1183
8UD6|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z