J3_8UD7_003

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAG*CUUUAAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD7|1|1A|G|1055
8UD7|1|1A|G|1056
8UD7|1|1A|A|1057
8UD7|1|1A|G|1058
*
8UD7|1|1A|C|1080
8UD7|1|1A|U|1081
8UD7|1|1A|U|1082
8UD7|1|1A|U|1083
8UD7|1|1A|A|1084
8UD7|1|1A|A|1085
8UD7|1|1A|A|1086
8UD7|1|1A|G|1087
*
8UD7|1|1A|C|1102
8UD7|1|1A|A|1103
8UD7|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36