J3_8UD8_029
3D structure
- PDB id
- 8UD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 8UD8|1|2a|A|975, 8UD8|1|2a|G|976, 8UD8|1|2a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UD8_029 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0697
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UD8|1|2a|U|955
8UD8|1|2a|U|956
8UD8|1|2a|U|957
8UD8|1|2a|A|958
8UD8|1|2a|A|959
8UD8|1|2a|U|960
8UD8|1|2a|U|961
8UD8|1|2a|C|962
*
8UD8|1|2a|G|973
8UD8|1|2a|A|974
8UD8|1|2a|A|975
8UD8|1|2a|G|976
8UD8|1|2a|A|977
8UD8|1|2a|A|978
8UD8|1|2a|C|979
8UD8|1|2a|C|980
8UD8|1|2a|U|981
8UD8|1|2a|U|982
8UD8|1|2a|A|983
8UD8|1|2a|C|984
*
8UD8|1|2a|G|1221
8UD8|1|2a|G|1222
8UD8|1|2a|C|1223
8UD8|1|2a|G|1224
8UD8|1|2a|A|1225
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2j
- 30S ribosomal protein S10
- Chain 2m
- 30S ribosomal protein S13
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2s
- 30S ribosomal protein S19
- Chain 2w
- Transfer RNA; tRNA
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