J3_8UIK_002

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8UIK|1|L5|C|216, 8UIK|1|L5|C|217, 8UIK|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|C|196
8UIK|1|L5|A|197
8UIK|1|L5|A|198
8UIK|1|L5|G|199
*
8UIK|1|L5|C|215
8UIK|1|L5|C|216
8UIK|1|L5|C|217
8UIK|1|L5|A|218
8UIK|1|L5|G|219
8UIK|1|L5|C|220
8UIK|1|L5|C|221
8UIK|1|L5|C|222
8UIK|1|L5|G|223
8UIK|1|L5|U|224
8UIK|1|L5|G|225
8UIK|1|L5|G|226
8UIK|1|L5|A|227
8UIK|1|L5|C|228
*
8UIK|1|L5|G|240
8UIK|1|L5|G|241
8UIK|1|L5|U|242
8UIK|1|L5|A|243
8UIK|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26