J3_8UIK_007
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG
- Length
- 31 nucleotides
- Bulged bases
- 8UIK|1|L5|G|959, 8UIK|1|L5|C|962, 8UIK|1|L5|G|965, 8UIK|1|L5|C|967, 8UIK|1|L5|U|971, 8UIK|1|L5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UIK|1|L5|C|712
8UIK|1|L5|C|713
*
8UIK|1|L5|G|955
8UIK|1|L5|A|956
8UIK|1|L5|G|957
8UIK|1|L5|G|958
8UIK|1|L5|G|959
8UIK|1|L5|A|960
8UIK|1|L5|G|961
8UIK|1|L5|C|962
8UIK|1|L5|G|963
8UIK|1|L5|A|964
8UIK|1|L5|G|965
8UIK|1|L5|A|966
8UIK|1|L5|C|967
8UIK|1|L5|C|968
8UIK|1|L5|C|969
8UIK|1|L5|G|970
8UIK|1|L5|U|971
8UIK|1|L5|C|972
8UIK|1|L5|G|973
8UIK|1|L5|C|974
8UIK|1|L5|C|975
8UIK|1|L5|G|976
*
8UIK|1|L5|C|1278
8UIK|1|L5|A|1279
8UIK|1|L5|C|1280
8UIK|1|L5|G|1281
8UIK|1|L5|G|1282
8UIK|1|L5|G|1283
8UIK|1|L5|G|1284
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LF
- 60S ribosomal protein L7
- Chain Le
- 60S ribosomal protein L32
Coloring options: