J3_8UIK_015

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

8UIK|1|L5|C|2470, 8UIK|1|L5|A|2472, 8UIK|1|L5|G|2475, 8UIK|1|L5|G|2503, 8UIK|1|L5|C|2504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UIK_015 not in the Motif Atlas

Homologous match to J3_8CRE_016

Geometric discrepancy: 0.5983

The information below is about J3_8CRE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65403.1

Basepair signature

cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8UIK|1|L5|A|2451
8UIK|1|L5|G|2452
8UIK|1|L5|A|2453
8UIK|1|L5|U|2454
8UIK|1|L5|G|2455
8UIK|1|L5|G|2456
*
8UIK|1|L5|C|2465
8UIK|1|L5|G|2466
8UIK|1|L5|U|2467
8UIK|1|L5|U|2468
8UIK|1|L5|C|2469
8UIK|1|L5|C|2470
8UIK|1|L5|G|2471
8UIK|1|L5|A|2472
8UIK|1|L5|A|2473
8UIK|1|L5|G|2474
8UIK|1|L5|G|2475
8UIK|1|L5|G|2476
*
8UIK|1|L5|C|2501
8UIK|1|L5|G|2502
8UIK|1|L5|G|2503
8UIK|1|L5|C|2504
8UIK|1|L5|C|2505
8UIK|1|L5|G|2506
8UIK|1|L5|A|2507
8UIK|1|L5|U|2508

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37