J3_8UIK_016

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8UIK|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|A|2551
8UIK|1|L5|G|2552
8UIK|1|L5|A|2553
8UIK|1|L5|U|2554
8UIK|1|L5|G|2555
*
8UIK|1|L5|C|2572
8UIK|1|L5|A|2573
8UIK|1|L5|G|2574
8UIK|1|L5|U|2575
*
8UIK|1|L5|A|2757
8UIK|1|L5|G|2758
8UIK|1|L5|G|2759
8UIK|1|L5|G|2760
8UIK|1|L5|U|2761
8UIK|1|L5|G|2762
8UIK|1|L5|U|2763
8UIK|1|L5|A|2764
8UIK|1|L5|A|2765
8UIK|1|L5|A|2766
8UIK|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27