J3_8UIK_024

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8UIK|1|L5|U|4882, 8UIK|1|L5|A|4938, 8UIK|1|L5|C|4940, 8UIK|1|L5|A|4943, 8UIK|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|G|4751
8UIK|1|L5|U|4752
8UIK|1|L5|U|4753
8UIK|1|L5|G|4754
*
8UIK|1|L5|C|4879
8UIK|1|L5|C|4880
8UIK|1|L5|U|4881
8UIK|1|L5|U|4882
8UIK|1|L5|C|4883
*
8UIK|1|L5|G|4936
8UIK|1|L5|C|4937
8UIK|1|L5|A|4938
8UIK|1|L5|C|4939
8UIK|1|L5|C|4940
8UIK|1|L5|G|4941
8UIK|1|L5|C|4942
8UIK|1|L5|A|4943
8UIK|1|L5|C|4944
8UIK|1|L5|G|4945
8UIK|1|L5|U|4946
8UIK|1|L5|U|4947
8UIK|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a