J3_8UIK_025
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAU*GCUUCU*AAGG
- Length
- 13 nucleotides
- Bulged bases
- 8UIK|1|L5|U|4989, 8UIK|1|L5|C|4990, 8UIK|1|L5|A|5061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UIK|1|L5|C|4970
8UIK|1|L5|A|4971
8UIK|1|L5|U|4972
*
8UIK|1|L5|G|4986
8UIK|1|L5|C|4987
8UIK|1|L5|U|4988
8UIK|1|L5|U|4989
8UIK|1|L5|C|4990
8UIK|1|L5|U|4991
*
8UIK|1|L5|A|5060
8UIK|1|L5|A|5061
8UIK|1|L5|G|5062
8UIK|1|L5|G|5063
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LP
- 60S ribosomal protein L17
- Chain Ld
- 60S ribosomal protein L31
Coloring options: