J3_8UIK_039
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- 8UIK|1|S2|A|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UIK_039 not in the Motif Atlas
- Homologous match to J3_8CRE_083
- Geometric discrepancy: 0.2017
- The information below is about J3_8CRE_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.4
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8UIK|1|S2|U|1350
8UIK|1|S2|G|1351
*
8UIK|1|S2|U|1360
8UIK|1|S2|G|1361
8UIK|1|S2|U|1362
8UIK|1|S2|C|1363
*
8UIK|1|S2|G|1375
8UIK|1|S2|A|1376
8UIK|1|S2|U|1377
8UIK|1|S2|A|1378
8UIK|1|S2|A|1379
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein SA
- Chain SC
- 40S ribosomal protein S2
- Chain SR
- 40S ribosomal protein S17
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