J3_8UIY_007

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8UIY|1|L5|G|959, 8UIY|1|L5|C|962, 8UIY|1|L5|G|965, 8UIY|1|L5|C|967, 8UIY|1|L5|C|968, 8UIY|1|L5|C|969, 8UIY|1|L5|U|971, 8UIY|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIY|1|L5|C|712
8UIY|1|L5|C|713
*
8UIY|1|L5|G|955
8UIY|1|L5|A|956
8UIY|1|L5|G|957
8UIY|1|L5|G|958
8UIY|1|L5|G|959
8UIY|1|L5|A|960
8UIY|1|L5|G|961
8UIY|1|L5|C|962
8UIY|1|L5|G|963
8UIY|1|L5|A|964
8UIY|1|L5|G|965
8UIY|1|L5|A|966
8UIY|1|L5|C|967
8UIY|1|L5|C|968
8UIY|1|L5|C|969
8UIY|1|L5|G|970
8UIY|1|L5|U|971
8UIY|1|L5|C|972
8UIY|1|L5|G|973
8UIY|1|L5|C|974
8UIY|1|L5|C|975
8UIY|1|L5|G|976
*
8UIY|1|L5|C|1278
8UIY|1|L5|A|1279
8UIY|1|L5|C|1280
8UIY|1|L5|G|1281
8UIY|1|L5|G|1282
8UIY|1|L5|G|1283
8UIY|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32