J3_8UIY_024

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8UIY|1|L5|U|4882, 8UIY|1|L5|A|4938, 8UIY|1|L5|C|4940, 8UIY|1|L5|A|4943, 8UIY|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIY|1|L5|G|4751
8UIY|1|L5|U|4752
8UIY|1|L5|U|4753
8UIY|1|L5|G|4754
*
8UIY|1|L5|C|4879
8UIY|1|L5|C|4880
8UIY|1|L5|U|4881
8UIY|1|L5|U|4882
8UIY|1|L5|C|4883
*
8UIY|1|L5|G|4936
8UIY|1|L5|C|4937
8UIY|1|L5|A|4938
8UIY|1|L5|C|4939
8UIY|1|L5|C|4940
8UIY|1|L5|G|4941
8UIY|1|L5|C|4942
8UIY|1|L5|A|4943
8UIY|1|L5|C|4944
8UIY|1|L5|G|4945
8UIY|1|L5|U|4946
8UIY|1|L5|U|4947
8UIY|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a