J3_8UIZ_007

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8UIZ|1|L5|G|959, 8UIZ|1|L5|G|965, 8UIZ|1|L5|C|967, 8UIZ|1|L5|C|968, 8UIZ|1|L5|C|969, 8UIZ|1|L5|U|971, 8UIZ|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIZ|1|L5|C|712
8UIZ|1|L5|C|713
*
8UIZ|1|L5|G|955
8UIZ|1|L5|A|956
8UIZ|1|L5|G|957
8UIZ|1|L5|G|958
8UIZ|1|L5|G|959
8UIZ|1|L5|A|960
8UIZ|1|L5|G|961
8UIZ|1|L5|C|962
8UIZ|1|L5|G|963
8UIZ|1|L5|A|964
8UIZ|1|L5|G|965
8UIZ|1|L5|A|966
8UIZ|1|L5|C|967
8UIZ|1|L5|C|968
8UIZ|1|L5|C|969
8UIZ|1|L5|G|970
8UIZ|1|L5|U|971
8UIZ|1|L5|C|972
8UIZ|1|L5|G|973
8UIZ|1|L5|C|974
8UIZ|1|L5|C|975
8UIZ|1|L5|G|976
*
8UIZ|1|L5|C|1278
8UIZ|1|L5|A|1279
8UIZ|1|L5|C|1280
8UIZ|1|L5|G|1281
8UIZ|1|L5|G|1282
8UIZ|1|L5|G|1283
8UIZ|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32