3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
Length
29 nucleotides
Bulged bases
8UIZ|1|L5|G|4115, 8UIZ|1|L5|C|4116, 8UIZ|1|L5|U|4117, 8UIZ|1|L5|U|4118, 8UIZ|1|L5|G|4121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UIZ|1|L5|G|4091
8UIZ|1|L5|G|4092
8UIZ|1|L5|G|4093
8UIZ|1|L5|G|4094
8UIZ|1|L5|G|4095
8UIZ|1|L5|C|4096
8UIZ|1|L5|G|4097
*
8UIZ|1|L5|C|4112
8UIZ|1|L5|U|4113
8UIZ|1|L5|C|4114
8UIZ|1|L5|G|4115
8UIZ|1|L5|C|4116
8UIZ|1|L5|U|4117
8UIZ|1|L5|U|4118
8UIZ|1|L5|C|4119
8UIZ|1|L5|U|4120
8UIZ|1|L5|G|4121
8UIZ|1|L5|G|4122
8UIZ|1|L5|C|4123
8UIZ|1|L5|G|4124
8UIZ|1|L5|C|4125
8UIZ|1|L5|C|4126
8UIZ|1|L5|A|4127
8UIZ|1|L5|A|4128
8UIZ|1|L5|G|4129
*
8UIZ|1|L5|C|4155
8UIZ|1|L5|G|4156
8UIZ|1|L5|A|4157
8UIZ|1|L5|C|4158

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LG
60S ribosomal protein L7a
Chain LX
60S ribosomal protein L23a
Chain LZ
60S ribosomal protein L27
Chain Lc
60S ribosomal protein L30
Chain Lg
60S ribosomal protein L34
Chain Lp
60S ribosomal protein L37a

Coloring options:

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