J3_8UIZ_024

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8UIZ|1|L5|U|4882, 8UIZ|1|L5|A|4938, 8UIZ|1|L5|C|4940, 8UIZ|1|L5|A|4943, 8UIZ|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIZ|1|L5|G|4751
8UIZ|1|L5|U|4752
8UIZ|1|L5|U|4753
8UIZ|1|L5|G|4754
*
8UIZ|1|L5|C|4879
8UIZ|1|L5|C|4880
8UIZ|1|L5|U|4881
8UIZ|1|L5|U|4882
8UIZ|1|L5|C|4883
*
8UIZ|1|L5|G|4936
8UIZ|1|L5|C|4937
8UIZ|1|L5|A|4938
8UIZ|1|L5|C|4939
8UIZ|1|L5|C|4940
8UIZ|1|L5|G|4941
8UIZ|1|L5|C|4942
8UIZ|1|L5|A|4943
8UIZ|1|L5|C|4944
8UIZ|1|L5|G|4945
8UIZ|1|L5|U|4946
8UIZ|1|L5|U|4947
8UIZ|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a