J3_8UJ9_005

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8UJ9|1|L5|C|704, 8UJ9|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|C|451
8UJ9|1|L5|A|452
8UJ9|1|L5|G|453
8UJ9|1|L5|U|454
8UJ9|1|L5|C|455
*
8UJ9|1|L5|G|701
8UJ9|1|L5|U|702
8UJ9|1|L5|G|703
8UJ9|1|L5|C|704
8UJ9|1|L5|G|705
*
8UJ9|1|L5|C|1292
8UJ9|1|L5|G|1293
8UJ9|1|L5|A|1294
8UJ9|1|L5|C|1295
8UJ9|1|L5|G|1296

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28