J3_8UJ9_006

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8UJ9|1|L5|G|959, 8UJ9|1|L5|C|962, 8UJ9|1|L5|G|965, 8UJ9|1|L5|C|967, 8UJ9|1|L5|C|968, 8UJ9|1|L5|C|969, 8UJ9|1|L5|U|971, 8UJ9|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|C|712
8UJ9|1|L5|C|713
*
8UJ9|1|L5|G|955
8UJ9|1|L5|A|956
8UJ9|1|L5|G|957
8UJ9|1|L5|G|958
8UJ9|1|L5|G|959
8UJ9|1|L5|A|960
8UJ9|1|L5|G|961
8UJ9|1|L5|C|962
8UJ9|1|L5|G|963
8UJ9|1|L5|A|964
8UJ9|1|L5|G|965
8UJ9|1|L5|A|966
8UJ9|1|L5|C|967
8UJ9|1|L5|C|968
8UJ9|1|L5|C|969
8UJ9|1|L5|G|970
8UJ9|1|L5|U|971
8UJ9|1|L5|C|972
8UJ9|1|L5|G|973
8UJ9|1|L5|C|974
8UJ9|1|L5|C|975
8UJ9|1|L5|G|976
*
8UJ9|1|L5|C|1278
8UJ9|1|L5|A|1279
8UJ9|1|L5|C|1280
8UJ9|1|L5|G|1281
8UJ9|1|L5|G|1282
8UJ9|1|L5|G|1283
8UJ9|1|L5|G|1284

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32