J3_8UJ9_023

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8UJ9|1|L5|U|4882, 8UJ9|1|L5|A|4938, 8UJ9|1|L5|C|4940, 8UJ9|1|L5|A|4943, 8UJ9|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|G|4751
8UJ9|1|L5|U|4752
8UJ9|1|L5|U|4753
8UJ9|1|L5|G|4754
*
8UJ9|1|L5|C|4879
8UJ9|1|L5|C|4880
8UJ9|1|L5|U|4881
8UJ9|1|L5|U|4882
8UJ9|1|L5|C|4883
*
8UJ9|1|L5|G|4936
8UJ9|1|L5|C|4937
8UJ9|1|L5|A|4938
8UJ9|1|L5|C|4939
8UJ9|1|L5|C|4940
8UJ9|1|L5|G|4941
8UJ9|1|L5|C|4942
8UJ9|1|L5|A|4943
8UJ9|1|L5|C|4944
8UJ9|1|L5|G|4945
8UJ9|1|L5|U|4946
8UJ9|1|L5|U|4947
8UJ9|1|L5|C|4948

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a