3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
UGG*UAAGAG*CAUUA
Length
14 nucleotides
Bulged bases
8UJ9|1|S2|G|921
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UJ9_030 not in the Motif Atlas
Homologous match to J3_8P9A_072
Geometric discrepancy: 0.1298
The information below is about J3_8P9A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.5
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8UJ9|1|S2|U|682
8UJ9|1|S2|G|683
8UJ9|1|S2|G|684
*
8UJ9|1|S2|U|918
8UJ9|1|S2|A|919
8UJ9|1|S2|A|920
8UJ9|1|S2|G|921
8UJ9|1|S2|A|922
8UJ9|1|S2|G|923
*
8UJ9|1|S2|C|1019
8UJ9|1|S2|A|1020
8UJ9|1|S2|U|1021
8UJ9|1|S2|U|1022
8UJ9|1|S2|A|1023

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SH
Small ribosomal subunit protein eS7
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S15a
Chain SX
40S ribosomal protein S23
Chain Sb
Small ribosomal subunit protein eS27

Coloring options:


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