3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CCG*UUCCG*CAAAG
Length
13 nucleotides
Bulged bases
8UJ9|1|S2|C|1138, 8UJ9|1|S2|A|1150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJ9|1|S2|C|1094
8UJ9|1|S2|C|1095
8UJ9|1|S2|G|1096
*
8UJ9|1|S2|U|1136
8UJ9|1|S2|U|1137
8UJ9|1|S2|C|1138
8UJ9|1|S2|C|1139
8UJ9|1|S2|G|1140
*
8UJ9|1|S2|C|1147
8UJ9|1|S2|A|1148
8UJ9|1|S2|A|1149
8UJ9|1|S2|A|1150
8UJ9|1|S2|G|1151

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SA
40S ribosomal protein SA
Chain SV
40S ribosomal protein S21
Chain SW
40S ribosomal protein S15a
Chain Sa
40S ribosomal protein S26
Chain Sb
Small ribosomal subunit protein eS27

Coloring options:

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