J3_8UJB_016

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8UJB|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|L5|A|2551
8UJB|1|L5|G|2552
8UJB|1|L5|A|2553
8UJB|1|L5|U|2554
8UJB|1|L5|G|2555
*
8UJB|1|L5|C|2572
8UJB|1|L5|A|2573
8UJB|1|L5|G|2574
8UJB|1|L5|U|2575
*
8UJB|1|L5|A|2757
8UJB|1|L5|G|2758
8UJB|1|L5|G|2759
8UJB|1|L5|G|2760
8UJB|1|L5|U|2761
8UJB|1|L5|G|2762
8UJB|1|L5|U|2763
8UJB|1|L5|A|2764
8UJB|1|L5|A|2765
8UJB|1|L5|A|2766
8UJB|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27