J3_8UJB_024

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8UJB|1|L5|U|4882, 8UJB|1|L5|A|4938, 8UJB|1|L5|C|4940, 8UJB|1|L5|A|4943, 8UJB|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|L5|G|4751
8UJB|1|L5|U|4752
8UJB|1|L5|U|4753
8UJB|1|L5|G|4754
*
8UJB|1|L5|C|4879
8UJB|1|L5|C|4880
8UJB|1|L5|U|4881
8UJB|1|L5|U|4882
8UJB|1|L5|C|4883
*
8UJB|1|L5|G|4936
8UJB|1|L5|C|4937
8UJB|1|L5|A|4938
8UJB|1|L5|C|4939
8UJB|1|L5|C|4940
8UJB|1|L5|G|4941
8UJB|1|L5|C|4942
8UJB|1|L5|A|4943
8UJB|1|L5|C|4944
8UJB|1|L5|G|4945
8UJB|1|L5|U|4946
8UJB|1|L5|U|4947
8UJB|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a