J3_8UJC_016

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8UJC|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJC|1|L5|A|2551
8UJC|1|L5|G|2552
8UJC|1|L5|A|2553
8UJC|1|L5|U|2554
8UJC|1|L5|G|2555
*
8UJC|1|L5|C|2572
8UJC|1|L5|A|2573
8UJC|1|L5|G|2574
8UJC|1|L5|U|2575
*
8UJC|1|L5|A|2757
8UJC|1|L5|G|2758
8UJC|1|L5|G|2759
8UJC|1|L5|G|2760
8UJC|1|L5|U|2761
8UJC|1|L5|G|2762
8UJC|1|L5|U|2763
8UJC|1|L5|A|2764
8UJC|1|L5|A|2765
8UJC|1|L5|A|2766
8UJC|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27