J3_8UJD_006

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8UJD|1|L5|C|704, 8UJD|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|C|451
8UJD|1|L5|A|452
8UJD|1|L5|G|453
8UJD|1|L5|U|454
8UJD|1|L5|C|455
*
8UJD|1|L5|G|701
8UJD|1|L5|U|702
8UJD|1|L5|G|703
8UJD|1|L5|C|704
8UJD|1|L5|G|705
*
8UJD|1|L5|C|1292
8UJD|1|L5|G|1293
8UJD|1|L5|A|1294
8UJD|1|L5|C|1295
8UJD|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28