J3_8UJD_009
3D structure
- PDB id
- 8UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 60S ribosome with eIF6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAG*CGUAG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UJD_009 not in the Motif Atlas
- Homologous match to J3_8CRE_010
- Geometric discrepancy: 0.1471
- The information below is about J3_8CRE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.7
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8UJD|1|L5|C|1546
8UJD|1|L5|A|1547
8UJD|1|L5|G|1548
*
8UJD|1|L5|C|1580
8UJD|1|L5|G|1581
8UJD|1|L5|U|1582
8UJD|1|L5|A|1583
8UJD|1|L5|G|1584
*
8UJD|1|L5|U|1609
8UJD|1|L5|C|1610
8UJD|1|L5|C|1611
8UJD|1|L5|G|1612
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LR
- 60S ribosomal protein L19
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
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