J3_8UJD_016

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8UJD|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|A|2551
8UJD|1|L5|G|2552
8UJD|1|L5|A|2553
8UJD|1|L5|U|2554
8UJD|1|L5|G|2555
*
8UJD|1|L5|C|2572
8UJD|1|L5|A|2573
8UJD|1|L5|G|2574
8UJD|1|L5|U|2575
*
8UJD|1|L5|A|2757
8UJD|1|L5|G|2758
8UJD|1|L5|G|2759
8UJD|1|L5|G|2760
8UJD|1|L5|U|2761
8UJD|1|L5|G|2762
8UJD|1|L5|U|2763
8UJD|1|L5|A|2764
8UJD|1|L5|A|2765
8UJD|1|L5|A|2766
8UJD|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27