J3_8UJD_024

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8UJD|1|L5|U|4882, 8UJD|1|L5|A|4938, 8UJD|1|L5|C|4940, 8UJD|1|L5|A|4943, 8UJD|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|G|4751
8UJD|1|L5|U|4752
8UJD|1|L5|U|4753
8UJD|1|L5|G|4754
*
8UJD|1|L5|C|4879
8UJD|1|L5|C|4880
8UJD|1|L5|U|4881
8UJD|1|L5|U|4882
8UJD|1|L5|C|4883
*
8UJD|1|L5|G|4936
8UJD|1|L5|C|4937
8UJD|1|L5|A|4938
8UJD|1|L5|C|4939
8UJD|1|L5|C|4940
8UJD|1|L5|G|4941
8UJD|1|L5|C|4942
8UJD|1|L5|A|4943
8UJD|1|L5|C|4944
8UJD|1|L5|G|4945
8UJD|1|L5|U|4946
8UJD|1|L5|U|4947
8UJD|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a